Dr. James D. Brooks M.D.?
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Dr. James D. Brooks M.D., Urologist

Dr. James D. Brooks M.D.

Urologist

300 Pasteur Dr Stanford CA, 94305

About

Dr. James Brooks is a urologist practicing in Stanford, CA. Dr. Brooks specializes in diseases of the urinary tract and the male reproductive system. This includes areas of the bladder, urethra, kidneys, penis and prostate. Urology is a surgical specialty and requires knowledge in other areas of expertise such as gynecology and internal medicine due to the variety of clinical problems that are involved.

Education and Training

Med Coll of Ga Sch of Med, Augusta Ga 1956

Board Certification

UrologyAmerican Board of UrologyABU

Provider Details

MaleEnglish 25 years of experience

Awards

  • Stanford University 2012 Keith and Jan Hurlbut Professor 
  •  2004-2013 Best Doctors Inc. 
  •  2010 Listing in Guide to America's Top Surgeons, Consumers' Research Counc 
  • Stanford University School of Medicine 2002-2003 Leutje-Stubbs Faculty Scholar 
  • Kidney Cancer Association 2000-2002 Eugene P. Schonfeld Medical Research Award 
  • Doris Duke Foundation 1998-2002 Clinician Scientist Award 
  •  1995-1997 Dornier Research Scholar, American Foundation for Urologic Disease 

Treatments

  • Prostate Cancer

Residency

  • Emory Univ Hosp, Psychiatry; Med Coll Of Ga Hosp & Cli, General Surgery  
  • Johns Hopkins Hospital  
  • Johns Hopkins University   1994
  • Johns Hopkins University Affiliated Hospitals   1994
  • Johns Hopkins University Affiliated Hospitals   1990

Fellowships

  • Johns Hopkins University MD    1997
  • Johns Hopkins University,Baltimore, Md, Usa   1997

Publications

  • Pathologytionwide prevalence of lymph node metastases in Gleason score 3?+?3?=?6 prostate cancer.2014
  • jourl of urologyProstate cancer risk profiles of asian-american men2014
  • UrologyUtilization of rel mass biopsy in patients with rel cell carcinoma.2014
  • jourl of urologyEpigenetic changes in histologically normal prostate tissues.2013
  • jourl of urologyComprehensive gene expression changes associated with mouse posttal kidney development.2013
  • CLINICAL CANCER RESEARCHUriry TMPRSS2:ERG and PCA3 in an Active Surveillance Cohort2013
  • The Open Prostate Cancer JourlTreatment and mortality in men with localized prostate cancer2013
  • Applied immunohistochemistry & molecular morphology : AIMM / official Identification and Characterization of 2 Testicular Germ Cell Markers, Glut3 and Cycli2.0
  • ADVANCES IN ATOMIC PATHOLOGYA Model for the Design2013
  • CancerMaging localized prostate cancer in the era of prostate-specific antigen screening.0
  • Intertiol jourl of cancer. Jourl intertiol du cancerUtilization of cytoreductive nephrectomy and patient survival in the targeted therapy era.0
  • BJU intertiolHigher rates of upgrading and upstaging0
  • Genome biologyDifferential D methylation with age displays both common2013
  • PLOS ONEmR-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene Expression2012
  • APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGYEvaluation of Putative Rel Cell Carcinoma Markers PAX-2, PAX-82012
  • JOURL OF UROLOGYGene Expression Changes Induced by Unilateral Ureteral Obstruction in Mice2012
  • JOURL OF MAGNETIC RESONCE IMAGINGMethods for registration of magnetic resonce images of ex vivo prostate specimens with histology2012
  • BRITISH JOURL OF CANCEREven-skipped homeobox 1 is frequently hypermethylated in prostate cancer2012
  • GENOME RESEARCHTranslatiol genomics: The challenge of developing cancer biomarkers2012
  • Translatiol Andrology and UrologyPIVOT and the challenges of localized prostate cancer care0
  • JOURL OF UROLOGYThe Potential Impact of Reproducibility of Gleason Grading2011
  • GENOME RESEARCHD methylation profiling reveals novel biomarkers2011
  • TUREIntegrated genomic alyses of ovarian carcinoma2011
  • JOURL OF UROLOGYSmall Prostate Size and High Grade Disease-Biology or Artifact?2011
  • UROLOGIC ONCOLOGY-SEMIRS AND ORIGIL INVESTIGATIONSComparison of prostate cancer tumor volume2011
  • MODERN PATHOLOGYSpecificity of brachyury in the distinction of chordoma from clear cell rel cell carcinoma2011
  • Intertiol jourl of urology : official jourl of the Japanese UrologicalLength of site-specific positive surgical margins as a risk factor for biochemical recurrence0
  • HUMAN PATHOLOGYThe distribution of PAX-2 immunoreactivity in the prostate gland, semil vesicle2010
  • UROLOGYCary Prostate Active Surveillance Study2010
  • Genes & cancerMolecular Stratification of Clear Cell Rel Cell Carcinoma by Consensus Clustering2010
  • The Open Prostate Cancer JourlGene expression changes induced by genistein in the prostate cancer cell line LNCaP2010
  • The Open Prostate Cancer JourlAdjuvant docetaxel and abbreviated androgen deprivation therapy2010
  • UROLOGIC ONCOLOGY-SEMIRS AND ORIGIL INVESTIGATIONSPrognostic significance of prostate cancer origiting from the transition zone2009
  • BMC GENOMICSDisorders of sex development expose transcriptiol autonomy of genetic sex and androgen2009
  • PLOS ONEAlteration of Gene Expression Sigtures of Cortical Differentiation2009
  • JOURL OF MOLECULAR MEDICINE-JMMApolipoprotein D (APOD) is a putative biomarker of androgen receptor function in androgen2009
  • AMERICAN JOURL OF CLINICAL PATHOLOGYRecommendations for the Reporting of Surgically Resected Specimens of Rel Cell Carcinoma2009
  • INTERTIOL JOURL OF CANCERInhibition of prostaglandin synthesis and actions by genistein2009
  • HUMAN PATHOLOGYRecommendations for the reporting of surgically resected specimens of rel cell carcinoma The2009
  • INTERTIOL JOURL OF RADIATION ONCOLOGY BIOLOGY PHYSICSSTEREOTACTIC BODY RADIOTHERAPY FOR LOCALIZED PROSTATE CANCER2009
  • BMC clinical pathologyCD 9 and vimentin distinguish clear cell from chromophobe rel cell carcinoma.2009
  • TUREComprehensive genomic characterization defines human glioblastoma genes and core pathways2008
  • PROSTATEIdentification of candidate prostate cancer genes through comparative expression-profiling of semil2008
  • INTERTIOL JOURL OF RADIATION ONCOLOGY BIOLOGY PHYSICSPostoperative prostate2008
  • AMERICAN JOURL OF SURGICAL PATHOLOGYhCAP-D3 expression marks a prostate cancer subtype with favorable clinical behavior and androgen2008
  • The Open Prostate Cancer JourlThe impact of tumor volume on outcomes after radical prostatectomy2008
  • CANCER RESEARCHGenomic profiling reveals altertive genetic pathways of prostate tumorigenesis2007
  • AMERICAN JOURL OF SURGICAL PATHOLOGYPlacental S100 (S100P) and GATA32007
  • CANCER LETTERSEndothelin-1 promotes cell survival in rel cell carcinoma through the ETA receptor2007
  • JOURL OF UROLOGYSelenomethionine induced transcriptiol programs in human prostate cancer cells2007
  • JOURL OF CELLULAR PHYSIOLOGYDistinctive gene expression of prostatic stromal cells cultured from diseased versus normal tissues2007
  • JOURL OF MOLECULAR MEDICINE-JMMCell-line and tissue-specific sigtures of androgen receptor-coregulator transcription2006
  • OMICS-A JOURL OF INTEGRATIVE BIOLOGYApplication of genomic technologies to human prostate cancer2006
  • PLOS MEDICINEGene expression profiling predicts survival in conventiol rel cell carcinoma2006
  • JOURL OF CLINICAL ONCOLOGYPreoperative PSA velocity is an independent prognostic factor2005
  • PROSTATEGenome-wide characterization of gene expression variations2005
  • JOURL OF PEDIATRIC SURGERYJuvenile posttraumatic high-flow priapism: current magement dilemmas2005
  • PLOS BIOLOGYA transcriptiol profile of aging in the human kidney2004
  • JOURL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGYMolecular activity of 12004
  • INTERTIOL JOURL OF RADIATION ONCOLOGY BIOLOGY PHYSICSRadiotherapy after radical prostatectomy: Does transient androgen suppression improve outcomes?2004
  • JOURL OF UROLOGYLower body mass index is associated with a higher prostate cancer detection rate2004
  • PROSTATEAlysis of vitamin D-regulated gene expression in LNCaP human prostate cancer cells using cD2004
  • UROLOGIC ONCOLOGY-SEMIRS AND ORIGIL INVESTIGATIONSTime trends in pathologic features of radical prostatectomy - impact of family history2004
  • MOLECULAR BIOLOGY OF THE CELLGene expression in the normal adult human kidney assessed by complementary D microarray2004
  • MOLECULAR BIOLOGY OF THE CELLDiverse effects of methylseleninic acid on the transcriptiol program of human prostate cancer cells2004
  • PROCEEDINGS OF THE TIOL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMGene expression profiling identifies clinically relevant subtypes of prostate cancer2004
  • PROCEEDINGS OF THE TIOL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMGene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors2003
  • AMERICAN JOURL OF PATHOLOGYGene expression patterns in rel cell carcinoma assessed by complementary D microarray2003
  • AMERICAN JOURL OF SURGICAL PATHOLOGYExpression of FKBP12 in benign2003
  • Current opinion in urologyMicroarray alysis in prostate cancer research.2002
  • JOURL OF BIOLOGICAL CHEMISTRYNovel pathways associated with bypassing cellular senescence in human prostate epithelial cells2002
  • EUROPEAN UROLOGYAtomy of the rectourethralis muscle2002
  • GENOME BIOLOGYTranscriptiol programs activated by exposure of human prostate cancer cells to androgen0
  • PathologyNationwide prevalence of lymph node metastases in Gleason score 3?+?3?=?6 prostate cancer.2014
  • journal of urologyProstate cancer risk profiles of asian-american men2014
  • UrologyReply.2014
  • UrologyUtilization of renal mass biopsy in patients with renal cell carcinoma.2014
  • The ProstateIncreased expression of GCNT1 is associated with altered O-glycosylation of PSA, PAP0
  • Applied immunohistochemistry & molecular morphologyEvaluation of SF-1 Expression in Testicular Germ Cell Tumors2013
  • journal of urologyEpigenetic changes in histologically normal prostate tissues.2013
  • journal of urologyComprehensive gene expression changes associated with mouse postnatal kidney development.2013
  • CLINICAL CANCER RESEARCHUrinary TMPRSS2:ERG and PCA3 in an Active Surveillance Cohort2013
  • ONCOGENEIncreased expression of NuSAP in recurrent prostate cancer is mediated by E2F12013
  • The Open Prostate Cancer JournalTreatment and mortality in men with localized prostate cancer2013
  • Applied immunohistochemistry & molecular morphology : AIMM / official Identification and Characterization of 2 Testicular Germ Cell Markers, Glut3 and CyclinA2.0
  • ADVANCES IN ANATOMIC PATHOLOGYA Model for the Design2013
  • CancerManaging localized prostate cancer in the era of prostate-specific antigen screening.0
  • International journal of cancer. Journal international du cancerUtilization of cytoreductive nephrectomy and patient survival in the targeted therapy era.0
  • BJU internationalHigher rates of upgrading and upstaging0
  • Genome biologyDifferential DNA methylation with age displays both common2013
  • PLOS ONEmRNA-Seq of Single Prostate Cancer Circulating Tumor Cells Reveals Recapitulation of Gene2012
  • APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGYEvaluation of Putative Renal Cell Carcinoma Markers PAX-2, PAX-82012
  • JOURNAL OF UROLOGYGene Expression Changes Induced by Unilateral Ureteral Obstruction in Mice2012
  • ONCOGENERecurrent deletion of CHD1 in prostate cancer with relevance to cell invasiveness2012
  • JOURNAL OF MAGNETIC RESONANCE IMAGINGMethods for registration of magnetic resonance images of ex vivo prostate specimens with histology2012
  • BRITISH JOURNAL OF CANCEREven-skipped homeobox 1 is frequently hypermethylated in prostate cancer2012
  • UROLOGYPerformance Characteristics of Prostate2012
  • CANCER RESEARCHDeficiency in Mammalian Histone H2B Ubiquitin Ligase Bre1 (Rnf202012
  • King, C. R., Brooks, J. D., Gill, H., Presti, J. C.LONG-TERM OUTCOMES FROM A PROSPECTIVE TRIAL OF STEREOTACTIC BODY RADIOTHERAPY FOR LOW2012
  • GENOME RESEARCHTranslational genomics: The challenge of developing cancer biomarkers2012
  • Translational Andrology and UrologyPIVOT and the challenges of localized prostate cancer care0
  • JOURNAL OF UROLOGYThe Potential Impact of Reproducibility of Gleason Grading2011
  • GENOME RESEARCHDNA methylation profiling reveals novel biomarkers2011
  • NATUREIntegrated genomic analyses of ovarian carcinoma2011
  • JOURNAL OF UROLOGYSmall Prostate Size and High Grade Disease-Biology or Artifact?2011
  • PLOS ONEA Tri-Marker Proliferation Index Predicts Biochemical Recurrence after Surgery for Prostate Cancer2011
  • UROLOGIC ONCOLOGY-SEMINARS AND ORIGINAL INVESTIGATIONSComparison of prostate cancer tumor volume2011
  • MODERN PATHOLOGYSpecificity of brachyury in the distinction of chordoma from clear cell renal cell carcinoma2011
  • International journal of urology : official journal of the Japanese UrLength of site-specific positive surgical margins as a risk factor for biochemical recurrence0
  • Urologic oncologySmoking and adverse outcomes at radical prostatectomy.0
  • HUMAN PATHOLOGYThe distribution of PAX-2 immunoreactivity in the prostate gland, seminal vesicle2010
  • UROLOGYCanary Prostate Active Surveillance Study2010
  • Genes & cancerMolecular Stratification of Clear Cell Renal Cell Carcinoma by Consensus Clustering Reveals2010
  • The Open Prostate Cancer JournalGene expression changes induced by genistein in the prostate cancer cell line LNCaP2010
  • The Open Prostate Cancer JournalAdjuvant docetaxel and abbreviated androgen deprivation therapy2010
  • UROLOGIC ONCOLOGY-SEMINARS AND ORIGINAL INVESTIGATIONSPrognostic significance of prostate cancer originating from the transition zone2009
  • BMC GENOMICSDisorders of sex development expose transcriptional autonomy of genetic sex and androgen2009
  • PLOS ONEAlteration of Gene Expression Signatures of Cortical Differentiation2009
  • JOURNAL OF MOLECULAR MEDICINE-JMMApolipoprotein D (APOD) is a putative biomarker of androgen receptor function in androgen2009
  • PROSTATEProstatic Soy Isoflavone Concentrations Exceed Serum Levels After Dietary Supplementation2009
  • AMERICAN JOURNAL OF CLINICAL PATHOLOGYRecommendations for the Reporting of Surgically Resected Specimens of Renal Cell Carcinoma2009
  • INTERNATIONAL JOURNAL OF CANCERInhibition of prostaglandin synthesis and actions by genistein2009
  • HUMAN PATHOLOGYRecommendations for the reporting of surgically resected specimens of renal cell carcinoma The2009
  • INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICSSTEREOTACTIC BODY RADIOTHERAPY FOR LOCALIZED PROSTATE CANCER2009
  • PROSTATETemporal Changes in Gene Expression Induced by Sulforaphane in Human Prostate Cancer Cells2009
  • BMC clinical pathologyCD 9 and vimentin distinguish clear cell from chromophobe renal cell carcinoma.2009
  • NATUREComprehensive genomic characterization defines human glioblastoma genes and core pathways2008
  • PROSTATEIdentification of candidate prostate cancer genes through comparative expression2008
  • INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICSPostoperative prostate2008
  • AMERICAN JOURNAL OF SURGICAL PATHOLOGYhCAP-D3 expression marks a prostate cancer subtype with favorable clinical behavior and androgen2008
  • The Open Prostate Cancer JournalThe impact of tumor volume on outcomes after radical prostatectomy2008
  • BMC GENOMICSIntrinsic androgen-dependent gene expression patterns revealed by comparison of genital fibroblasts2007
  • CANCER RESEARCHGenomic profiling reveals alternative genetic pathways of prostate tumorigenesis2007
  • AMERICAN JOURNAL OF SURGICAL PATHOLOGYPlacental S100 (S100P) and GATA32007
  • NUCLEIC ACIDS RESEARCHA promoting role of androgen receptor in androgen-sensitive and -insensitive prostate cancer cells2007
  • MODERN PATHOLOGYA variant TMPRSS2 isoform2007
  • CANCER LETTERSEndothelin-1 promotes cell survival in renal cell carcinoma through the ETA receptor2007
  • JOURNAL OF UROLOGYSelenomethionine induced transcriptional programs in human prostate cancer cells2007
  • JOURNAL OF CELLULAR PHYSIOLOGYDistinctive gene expression of prostatic stromal cells cultured from diseased versus normal tissues2007
  • JOURNAL OF MOLECULAR MEDICINE-JMMCell-line and tissue-specific signatures of androgen receptor-coregulator transcription2006
  • OMICS-A JOURNAL OF INTEGRATIVE BIOLOGYApplication of genomic technologies to human prostate cancer2006
  • UROLOGYReliability of small amounts of cancer in prostate biopsies to reveal pathologic grade2006
  • UROLOGYRefractory hematuria from amyloidosis successfully treated by splenectomy2006
  • BMC CANCERModest induction of phase 2 enzyme activity in the F-344 rat prostate2006
  • PLOS MEDICINEGene expression profiling predicts survival in conventional renal cell carcinoma2006
  • CANCER RESEARCHThe retinoic acid synthesis gene ALDH1a2 is a candidate tumor suppressor in prostate cancer2005
  • JOURNAL OF CLINICAL ONCOLOGYPreoperative PSA velocity is an independent prognostic factor2005
  • PROSTATEGenome-wide characterization of gene expression variations2005
  • JOURNAL OF PEDIATRIC SURGERYJuvenile posttraumatic high-flow priapism: current management dilemmas2005
  • CLINICAL CANCER RESEARCHReg IV: A promising marker of hormone refractory metastatic prostate cancer2005
  • CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTIONResveratrol-induced gene expression profiles in human prostate cancer cells2005
  • PROSTATEMolecular targets of Doxazosin in human prostatic stromal cells2005
  • UROLOGYPositive family history of prostate cancer not2005
  • Cancer genomics & proteomicsMicroarray Data Mining for Potential Selenium Targets in Chemoprevention of Prostate Cancer.2005
  • PLOS BIOLOGYA transcriptional profile of aging in the human kidney2004
  • UROLOGYVascular invasion predicts recurrence after radical prostatectomy2004
  • JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGYMolecular activity of 12004
  • INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICSRadiotherapy after radical prostatectomy: Does transient androgen suppression improve outcomes?2004
  • JOURNAL OF UROLOGYLower body mass index is associated with a higher prostate cancer detection rate2004
  • PROSTATEAnalysis of vitamin D2004
  • UROLOGIC ONCOLOGY-SEMINARS AND ORIGINAL INVESTIGATIONSTime trends in pathologic features of radical prostatectomy - impact of family history2004
  • UROLOGYBiochemical remission after resection of prostate cancer lung metastasis2004
  • MOLECULAR BIOLOGY OF THE CELLGene expression in the normal adult human kidney assessed by complementary DNA microarray2004
  • MOLECULAR BIOLOGY OF THE CELLDiverse effects of methylseleninic acid on the transcriptional program of human prostate cancer2004
  • PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OGene expression profiling identifies clinically relevant subtypes of prostate cancer2004
  • PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OGene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors2003
  • AMERICAN JOURNAL OF PATHOLOGYGene expression patterns in renal cell carcinoma assessed by complementary DNA microarray2003
  • UROLOGYBiochemical recurrence without PSA progression characterizes a subset of patients after radical2003
  • GENOME BIOLOGYDifferential gene-expression patterns in genital fibroblasts of normal males and 462003
  • AMERICAN JOURNAL OF SURGICAL PATHOLOGYExpression of FKBP12 in benign2003
  • CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTIONIdentification of potential prostate cancer preventive agents through induction of quinone reduct2002
  • PROSTATEPolymorphisms in the androgen receptor and type II 5 alpha2002
  • Current opinion in urologyMicroarray analysis in prostate cancer research.2002
  • PROSTATESilencing of pi-class glutathione S-transferase in MDA PCa 2a and MDA PCa 2b cells2002
  • JOURNAL OF BIOLOGICAL CHEMISTRYNovel pathways associated with bypassing cellular senescence in human prostate epithelial cells2002
  • EUROPEAN UROLOGYAnatomy of the rectourethralis muscle2002
  • GENOME BIOLOGYTranscriptional programs activated by exposure of human prostate cancer cells to androgen0

Experience & Accolades

  • MemberMembership Committee
  • Member2004 - 2008 Society for Basic Urologic Research
  • Vice Chair 2014 - 2014 Department of Urology
  • Member2013 - 2014 Associate Dean, Academic Affairs, Stanford University School of Medicine
  • Member2012 - 2014 Chief, Urologic Oncology, Department of Urology
  • Associate Chair 2010 - 2014 Prostate Cancer Working Group EDRN
  • Member2008 - 2014 Editor-in-Chief, The Open Prostate Cancer Journal
  • Member2011 - 2014 Editorial Board, Andrology
  • Member2010 - 2014 Editorial Board, Prostate Cancer
  • Member2000 - 2014 Editorial Board, The Prostate
  • Acting Chair2012 - 2012 Department of Urology

Dr. James D. Brooks M.D.'s Practice location

Practice At 300 Pasteur Dr

300 Pasteur Dr -
Stanford, CA 94305
Get Direction
New patients: 650-723-6762, 650-498-5710

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